FMRI: Difference between revisions
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The following pipeline describes processing steps for multi-echo ICA (ME-ICA) data, as agreed by Manfred, Frantisek and others in May 2018. This is the pipeline applied to NSPN and BioDep projects. | The following pipeline describes processing steps for multi-echo ICA (ME-ICA) data, as agreed by Manfred, Frantisek and others in May 2018. This is the pipeline applied to NSPN and BioDep projects. | ||
The ME-ICA script to be run is | The ME-ICA script to be run is located on the BCNI server at: "/home/rr480/Code/MATLAB/fMRI/MEICA/meica_manfred_2018_05_10/meica.py". This includes the following options (some of which are specific to NSPN data): | ||
-d 'echo[1,2,3].nii' | |||
-a 'brainmask.nii' | |||
-e 13.0,30.55,48.1 | |||
--TR=2.43 | |||
--tpattern=seq-z | |||
-b 15s | |||
--fres=2.5 | |||
--mask_mode='anat' | |||
--no_skullstrip --OVERWRITE | |||
Revision as of 11:22, 10 May 2018
MEICA and Tedana
The following pipeline describes processing steps for multi-echo ICA (ME-ICA) data, as agreed by Manfred, Frantisek and others in May 2018. This is the pipeline applied to NSPN and BioDep projects.
The ME-ICA script to be run is located on the BCNI server at: "/home/rr480/Code/MATLAB/fMRI/MEICA/meica_manfred_2018_05_10/meica.py". This includes the following options (some of which are specific to NSPN data):
-d 'echo[1,2,3].nii' -a 'brainmask.nii' -e 13.0,30.55,48.1 --TR=2.43 --tpattern=seq-z -b 15s --fres=2.5 --mask_mode='anat' --no_skullstrip --OVERWRITE
